/EXTERNAL McGill EMC/mapping_coverage/K006134_1_lane_gembs
BACK
SAMPLE K006134_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
798014381 |
100% |
73156192668 |
100% |
| Mapped |
786312629 |
98.53 % |
71986017468 |
98.40 % |
| Passed |
638252622 |
79.98 % |
57180016768 |
78.16 % |
| NotPassed |
148060007 |
18.55 % |
14806000700 |
20.24 % |
| |
|
|
|
|
| LowMAPQ |
108716142 |
13.62 % |
10871614200 |
14.86 % |
| MateUnmapped |
11701752 |
1.47 % |
1170175200 |
1.60 % |
| Duplicate |
28008441 |
3.51 % |
2800844100 |
3.83 % |
| BadOrientation |
50 |
0.00 % |
5000 |
0.00 % |
| LargeInsertSize |
79686 |
0.01 % |
7968600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11255688 |
1.41 % |
1125568800 |
1.54 % |
| Unmapped |
11701752 |
1.47 % |
1170175200 |
1.60 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63805318100 |
100% |
| Passed |
53348576805 |
83.61 % |
| Trimmed |
2898572305 |
4.54 % |
| Clipped |
93416666 |
0.15 % |
| Overlapping |
6531884666 |
10.24 % |
| LowQuality |
932867658 |
1.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |