/EXTERNAL McGill EMC/methylation/K006134_1_lane_gembs

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SAMPLE K006134_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25344684 15947507 62.92 %
NonRefCpG 247306 133343 53.92 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006134_1_lane_gembs_coverage_refCpG.png ./IMG//K006134_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006134_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006134_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006134_1_lane_gembs_quality_refcpg.png ./IMG//K006134_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006134_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4794233 9.73 % 1489453 4.11 % 40926 8.80 % 11646 3.72 %
Intermediate (0.3-0.7) 11290552 22.91 % 6946509 19.19 % 116030 24.96 % 62950 20.09 %
Methylated (0.7-1) 33199733 67.36 % 27768997 76.70 % 307913 66.24 % 238707 76.19 %
Median Methylation 0.820 0.860 0.810 0.850