/EXTERNAL McGill EMC/K006135_1_lane_gembs

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SAMPLE K006135_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 318574548 100.00 % 159287274 100.00 % 159287274 100.00 %
General Reads 311569507 97.80 % 156249930 98.09 % 155319577 97.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 150940 0.05 % 75705 0.05 % 75235 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6854101 2.15 % 2961639 1.86 % 3892462 2.44 %
Bisulfite_reads C2T 159085833 49.94 % 79769698 50.08 % 79316135 49.79 %
Bisulfite_reads G2A 152634614 47.91 % 76555937 48.06 % 76078677 47.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 127240966
Average Unique 79.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12521567813 38.92 % 4891865426 30.41 % 7629702387 47.42 %
Base Counts Overall C 3410920902 10.60 % 175041947 1.09 % 3235878955 20.11 %
Base Counts Overall G 3434831604 10.68 % 3253146198 20.22 % 181685406 1.13 %
Base Counts Overall T 12434531161 38.65 % 7591862923 47.19 % 4842668238 30.10 %
Base Counts Overall N 374177868 1.16 % 176098180 1.09 % 198079688 1.23 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9946102649126954
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 145610280



Mapping Quality

Mapping Quality Histogram
K006135_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006135_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0049.Bisulfite-Seq.DNA_Methylation.EGAX00001273057.fastq_MS004901