/EXTERNAL McGill EMC/K006135_1_lane_gembs/McGill0049.Bisulfite-Seq.DNA_Methylation.EGAX00001273057.fastq_MS004901

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SAMPLE K006135_1_lane_gembs LANE McGill0049.Bisulfite-Seq.DNA_Methylation.EGAX00001273057.fastq_MS004901

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	318574548	100.00 %	159287274	100.00 %	159287274	100.00 %
General Reads	311569507	97.80 %	156249930	98.09 %	155319577	97.51 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	150940	0.05 %	75705	0.05 %	75235	0.05 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	6854101	2.15 %	2961639	1.86 %	3892462	2.44 %
Bisulfite_reads C2T	159085833	49.94 %	79769698	50.08 %	79316135	49.79 %
Bisulfite_reads G2A	152634614	47.91 %	76555937	48.06 %	76078677	47.76 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	127240966
Average Unique	79.88 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	12521567813	38.92 %	4891865426	30.41 %	7629702387	47.42 %
Base Counts Overall C	3410920902	10.60 %	175041947	1.09 %	3235878955	20.11 %
Base Counts Overall G	3434831604	10.68 %	3253146198	20.22 %	181685406	1.13 %
Base Counts Overall T	12434531161	38.65 %	7591862923	47.19 %	4842668238	30.10 %
Base Counts Overall N	374177868	1.16 %	176098180	1.09 %	198079688	1.23 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9946102649126954
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	145610280

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	159287274
100	159287274

Insert Size Plot

Insert Size Histogram