/EXTERNAL McGill EMC/mapping_coverage/K006135_1_lane_gembs
BACK
SAMPLE K006135_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
309715496 |
100% |
27312772090 |
100% |
| Mapped |
307045594 |
99.14 % |
27045781890 |
99.02 % |
| Passed |
252636980 |
81.57 % |
21604920490 |
79.10 % |
| NotPassed |
54408614 |
17.57 % |
5440861400 |
19.92 % |
| |
|
|
|
|
| LowMAPQ |
44487470 |
14.36 % |
4448747000 |
16.29 % |
| MateUnmapped |
2669902 |
0.86 % |
266990200 |
0.98 % |
| Duplicate |
1868881 |
0.60 % |
186888100 |
0.68 % |
| BadOrientation |
28 |
0.00 % |
2800 |
0.00 % |
| LargeInsertSize |
1866 |
0.00 % |
186600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8050369 |
2.60 % |
805036900 |
2.95 % |
| Unmapped |
2669902 |
0.86 % |
266990200 |
0.98 % |
Base Level Counts
| Bases |
# |
% |
| Total |
25249562500 |
100% |
| Passed |
20117816178 |
79.68 % |
| Trimmed |
1111234036 |
4.40 % |
| Clipped |
38130914 |
0.15 % |
| Overlapping |
3606511096 |
14.28 % |
| LowQuality |
375870276 |
1.49 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |