/EXTERNAL McGill EMC/methylation/K006135_1_lane_gembs

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SAMPLE K006135_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26047469 3280460 12.59 %
NonRefCpG 330982 23236 7.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006135_1_lane_gembs_coverage_refCpG.png ./IMG//K006135_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006135_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006135_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006135_1_lane_gembs_quality_refcpg.png ./IMG//K006135_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006135_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7204497 14.99 % 390246 4.06 % 136229 22.54 % 4072 4.81 %
Intermediate (0.3-0.7) 15989593 33.27 % 2096441 21.80 % 204189 33.78 % 18749 22.14 %
Methylated (0.7-1) 24863070 51.74 % 7131370 74.15 % 264062 43.68 % 61853 73.05 %
Median Methylation 0.710 0.840 0.640 0.840