/EXTERNAL McGill EMC/K006137_1_lane_gembs

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SAMPLE K006137_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 771797096 100.00 % 385898548 100.00 % 385898548 100.00 %
General Reads 743037685 96.27 % 375025159 97.18 % 368012526 95.37 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 305793 0.04 % 154051 0.04 % 151742 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28453618 3.69 % 10719338 2.78 % 17734280 4.60 %
Bisulfite_reads C2T 378780718 49.08 % 191154294 49.53 % 187626424 48.62 %
Bisulfite_reads G2A 364562760 47.24 % 184024916 47.69 % 180537844 46.78 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 298315264
Average Unique 77.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 30566976648 39.21 % 12948686248 33.22 % 17618290400 45.20 %
Base Counts Overall C 8169445427 10.48 % 591215147 1.52 % 7578230280 19.44 %
Base Counts Overall G 8348819145 10.71 % 7655480683 19.64 % 693338462 1.78 %
Base Counts Overall T 30060497432 38.56 % 17381933559 44.60 % 12678563873 32.53 %
Base Counts Overall N 805768044 1.03 % 398437711 1.02 % 407330333 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9588488727646173
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 339837097



Mapping Quality

Mapping Quality Histogram
K006137_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006137_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001425070.release_6