/EXTERNAL McGill EMC/mapping_coverage/K006137_1_lane_gembs
BACK
SAMPLE K006137_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
699072667 |
100% |
64535501869 |
100% |
| Mapped |
686130266 |
98.15 % |
63241261769 |
97.99 % |
| Passed |
512577165 |
73.32 % |
45885951669 |
71.10 % |
| NotPassed |
173553101 |
24.83 % |
17355310100 |
26.89 % |
| |
|
|
|
|
| LowMAPQ |
119599546 |
17.11 % |
11959954600 |
18.53 % |
| MateUnmapped |
12942401 |
1.85 % |
1294240100 |
2.01 % |
| Duplicate |
44412069 |
6.35 % |
4441206900 |
6.88 % |
| BadOrientation |
72 |
0.00 % |
7200 |
0.00 % |
| LargeInsertSize |
6536 |
0.00 % |
653600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9534878 |
1.36 % |
953487800 |
1.48 % |
| Unmapped |
12942401 |
1.85 % |
1294240100 |
2.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
51224311600 |
100% |
| Passed |
42042414529 |
82.08 % |
| Trimmed |
2334021643 |
4.56 % |
| Clipped |
111255840 |
0.22 % |
| Overlapping |
5227104091 |
10.20 % |
| LowQuality |
1509515497 |
2.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |