/EXTERNAL McGill EMC/methylation/K006137_1_lane_gembs

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SAMPLE K006137_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26019338 11366555 43.69 %
NonRefCpG 288583 97585 33.82 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006137_1_lane_gembs_coverage_refCpG.png ./IMG//K006137_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006137_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006137_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006137_1_lane_gembs_quality_refcpg.png ./IMG//K006137_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006137_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4773596 9.86 % 1067048 4.04 % 78158 14.82 % 14053 5.64 %
Intermediate (0.3-0.7) 13843553 28.60 % 5871018 22.22 % 158020 29.96 % 58608 23.54 %
Methylated (0.7-1) 29782281 61.53 % 19485094 73.74 % 291198 55.22 % 176335 70.82 %
Median Methylation 0.780 0.840 0.740 0.830