/EXTERNAL McGill EMC/mapping_coverage/K006139_1_lane_gembs
BACK
SAMPLE K006139_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
389706031 |
100% |
38130556652 |
100% |
| Mapped |
377395439 |
96.84 % |
36899497452 |
96.77 % |
| Passed |
184288992 |
47.29 % |
17588852752 |
46.13 % |
| NotPassed |
193106447 |
49.55 % |
19310644700 |
50.64 % |
| |
|
|
|
|
| LowMAPQ |
73588438 |
18.88 % |
7358843800 |
19.30 % |
| MateUnmapped |
12310592 |
3.16 % |
1231059200 |
3.23 % |
| Duplicate |
104557856 |
26.83 % |
10455785600 |
27.42 % |
| BadOrientation |
4 |
0.00 % |
400 |
0.00 % |
| LargeInsertSize |
4036 |
0.00 % |
403600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14956113 |
3.84 % |
1495611300 |
3.92 % |
| Unmapped |
12310592 |
3.16 % |
1231059200 |
3.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
18354303300 |
100% |
| Passed |
15997656852 |
87.16 % |
| Trimmed |
866695061 |
4.72 % |
| Clipped |
88445992 |
0.48 % |
| Overlapping |
677004556 |
3.69 % |
| LowQuality |
724500839 |
3.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |