/EXTERNAL McGill EMC/K006140_1_lane_gembs

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SAMPLE K006140_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 854475642 100.00 % 427237821 100.00 % 427237821 100.00 %
General Reads 828700627 96.98 % 417741602 97.78 % 410959025 96.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6970061 0.82 % 3516833 0.82 % 3453228 0.81 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18804954 2.20 % 5979386 1.40 % 12825568 3.00 %
Bisulfite_reads C2T 427896739 50.08 % 215661736 50.48 % 212235003 49.68 %
Bisulfite_reads G2A 407773949 47.72 % 205596699 48.12 % 202177250 47.32 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 345883217
Average Unique 80.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33808809976 39.17 % 13361119450 30.96 % 20447690526 47.39 %
Base Counts Overall C 9163972946 10.62 % 483632955 1.12 % 8680339991 20.12 %
Base Counts Overall G 9132658879 10.58 % 8642351078 20.03 % 490307801 1.14 %
Base Counts Overall T 33278018450 38.56 % 20216464655 46.85 % 13061553795 30.27 %
Base Counts Overall N 918579591 1.06 % 447451783 1.04 % 471127808 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9837567711822289
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 397335063



Mapping Quality

Mapping Quality Histogram
K006140_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006140_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0326.Bisulfite-Seq.DNA_Methylation.EGAX00001273372.fastq_MS032601