/EXTERNAL McGill EMC/mapping_coverage/K006140_1_lane_gembs
BACK
SAMPLE K006140_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
820729924 |
100% |
74396261880 |
100% |
| Mapped |
810259550 |
98.72 % |
73349224480 |
98.59 % |
| Passed |
676018737 |
82.37 % |
59925143180 |
80.55 % |
| NotPassed |
134240813 |
16.36 % |
13424081300 |
18.04 % |
| |
|
|
|
|
| LowMAPQ |
111817312 |
13.62 % |
11181731200 |
15.03 % |
| MateUnmapped |
10470374 |
1.28 % |
1047037400 |
1.41 % |
| Duplicate |
7996152 |
0.97 % |
799615200 |
1.07 % |
| BadOrientation |
54 |
0.00 % |
5400 |
0.00 % |
| LargeInsertSize |
5000 |
0.00 % |
500000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14422295 |
1.76 % |
1442229500 |
1.94 % |
| Unmapped |
10470374 |
1.28 % |
1047037400 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
67585832700 |
100% |
| Passed |
55587836360 |
82.25 % |
| Trimmed |
3041954920 |
4.50 % |
| Clipped |
62559618 |
0.09 % |
| Overlapping |
7598129902 |
11.24 % |
| LowQuality |
1295351900 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |