/EXTERNAL McGill EMC/methylation/K006147_1_lane_gembs

BACK

SAMPLE K006147_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26373629 16813738 63.75 %
NonRefCpG 280796 144541 51.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006147_1_lane_gembs_coverage_refCpG.png ./IMG//K006147_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006147_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006147_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006147_1_lane_gembs_quality_refcpg.png ./IMG//K006147_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006147_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5770557 11.24 % 1926507 5.15 % 68643 13.00 % 15793 4.67 %
Intermediate (0.3-0.7) 10874741 21.18 % 6576246 17.58 % 122624 23.22 % 61974 18.32 %
Methylated (0.7-1) 34692428 67.58 % 28899848 77.27 % 336899 63.79 % 260434 77.01 %
Median Methylation 0.820 0.860 0.800 0.850