/EXTERNAL McGill EMC/K006149_1_lane_gembs

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SAMPLE K006149_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 934175856 100.00 % 467087928 100.00 % 467087928 100.00 %
General Reads 890116087 95.28 % 446532647 95.60 % 443583440 94.97 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 367911 0.04 % 184674 0.04 % 183237 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43691858 4.68 % 20370607 4.36 % 23321251 4.99 %
Bisulfite_reads C2T 458865339 49.12 % 230219441 49.29 % 228645898 48.95 %
Bisulfite_reads G2A 431618659 46.20 % 216497880 46.35 % 215120779 46.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 350847355
Average Unique 75.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36432387882 38.61 % 15689289863 33.26 % 20743098019 43.97 %
Base Counts Overall C 10523087272 11.15 % 945059649 2.00 % 9578027623 20.30 %
Base Counts Overall G 10850876107 11.50 % 9858761970 20.90 % 992114137 2.10 %
Base Counts Overall T 35565395628 37.69 % 20212063372 42.84 % 15353332256 32.54 %
Base Counts Overall N 980014567 1.04 % 470705874 1.00 % 509308693 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9692696899163801
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 413796155



Mapping Quality

Mapping Quality Histogram
K006149_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006149_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0007.Bisulfite-Seq.DNA_Methylation.EGAX00001272833.fastq_MS000701