/EXTERNAL McGill EMC/mapping_coverage/K006149_1_lane_gembs
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SAMPLE K006149_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
876843085 |
100% |
81231190128 |
100% |
| Mapped |
866044478 |
98.77 % |
80151329428 |
98.67 % |
| Passed |
680036836 |
77.56 % |
61550565228 |
75.77 % |
| NotPassed |
186007642 |
21.21 % |
18600764200 |
22.90 % |
| |
|
|
|
|
| LowMAPQ |
146613400 |
16.72 % |
14661340000 |
18.05 % |
| MateUnmapped |
10798607 |
1.23 % |
1079860700 |
1.33 % |
| Duplicate |
13378630 |
1.53 % |
1337863000 |
1.65 % |
| BadOrientation |
100 |
0.00 % |
10000 |
0.00 % |
| LargeInsertSize |
82148 |
0.01 % |
8214800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25933364 |
2.96 % |
2593336400 |
3.19 % |
| Unmapped |
10798607 |
1.23 % |
1079860700 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
67970612500 |
100% |
| Passed |
57431126506 |
84.49 % |
| Trimmed |
3134190083 |
4.61 % |
| Clipped |
91062598 |
0.13 % |
| Overlapping |
6328984674 |
9.31 % |
| LowQuality |
985248639 |
1.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |