/EXTERNAL McGill EMC/methylation/K006149_1_lane_gembs

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SAMPLE K006149_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26611764 17603145 66.15 %
NonRefCpG 271382 149505 55.09 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006149_1_lane_gembs_coverage_refCpG.png ./IMG//K006149_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006149_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006149_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006149_1_lane_gembs_quality_refcpg.png ./IMG//K006149_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006149_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5044852 9.80 % 1528881 3.98 % 54843 10.76 % 15423 4.46 %
Intermediate (0.3-0.7) 12042940 23.41 % 7406426 19.26 % 130346 25.56 % 70984 20.54 %
Methylated (0.7-1) 34366397 66.79 % 29511342 76.76 % 324688 63.68 % 259106 74.99 %
Median Methylation 0.820 0.860 0.800 0.850