/EXTERNAL McGill EMC/K006150_1_lane_gembs

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SAMPLE K006150_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 864883540 100.00 % 432441770 100.00 % 432441770 100.00 %
General Reads 826830719 95.60 % 414052797 95.75 % 412777922 95.45 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 585000 0.07 % 293868 0.07 % 291132 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37467821 4.33 % 18095105 4.18 % 19372716 4.48 %
Bisulfite_reads C2T 425732347 49.22 % 213226765 49.31 % 212505582 49.14 %
Bisulfite_reads G2A 401683372 46.44 % 201119900 46.51 % 200563472 46.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 325640547
Average Unique 75.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33403050498 38.24 % 14489710241 33.17 % 18913340257 43.30 %
Base Counts Overall C 10018941941 11.47 % 891430445 2.04 % 9127511496 20.90 %
Base Counts Overall G 10498094680 12.02 % 9452647320 21.64 % 1045447360 2.39 %
Base Counts Overall T 32530122029 37.24 % 18406929404 42.14 % 14123192625 32.34 %
Base Counts Overall N 903028392 1.03 % 435901360 1.00 % 467127032 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9685549640361156
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 384138631



Mapping Quality

Mapping Quality Histogram
K006150_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006150_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0029.Bisulfite-Seq.DNA_Methylation.EGAX00001273008.fastq_MS002901