/EXTERNAL McGill EMC/mapping_coverage/K006150_1_lane_gembs
BACK
SAMPLE K006150_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
814629519 |
100% |
73937887629 |
100% |
| Mapped |
801265672 |
98.36 % |
72601502929 |
98.19 % |
| Passed |
631652531 |
77.54 % |
55640188829 |
75.25 % |
| NotPassed |
169613141 |
20.82 % |
16961314100 |
22.94 % |
| |
|
|
|
|
| LowMAPQ |
145070980 |
17.81 % |
14507098000 |
19.62 % |
| MateUnmapped |
13363847 |
1.64 % |
1336384700 |
1.81 % |
| Duplicate |
12302103 |
1.51 % |
1230210300 |
1.66 % |
| BadOrientation |
94 |
0.00 % |
9400 |
0.00 % |
| LargeInsertSize |
332474 |
0.04 % |
33247400 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11907490 |
1.46 % |
1190749000 |
1.61 % |
| Unmapped |
13363847 |
1.64 % |
1336384700 |
1.81 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63147407100 |
100% |
| Passed |
51495419934 |
81.55 % |
| Trimmed |
2829165093 |
4.48 % |
| Clipped |
130223447 |
0.21 % |
| Overlapping |
7376994824 |
11.68 % |
| LowQuality |
1315603802 |
2.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |