/EXTERNAL McGill EMC/methylation/K006150_1_lane_gembs

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SAMPLE K006150_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26481909 16460132 62.16 %
NonRefCpG 280338 135857 48.46 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006150_1_lane_gembs_coverage_refCpG.png ./IMG//K006150_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006150_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006150_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006150_1_lane_gembs_quality_refcpg.png ./IMG//K006150_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006150_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4922416 9.73 % 1397067 3.85 % 67579 12.97 % 17884 5.45 %
Intermediate (0.3-0.7) 12024991 23.77 % 6937444 19.12 % 135442 26.00 % 67916 20.71 %
Methylated (0.7-1) 33640713 66.50 % 27942781 77.03 % 317885 61.03 % 242144 73.84 %
Median Methylation 0.810 0.860 0.780 0.850