/EXTERNAL McGill EMC/K006154_1_lane_gembs

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SAMPLE K006154_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2106075322 100.00 % 1053037661 100.00 % 1053037661 100.00 %
General Reads 2046357623 97.16 % 1039845748 98.75 % 1006511875 95.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1102004 0.05 % 566800 0.05 % 535204 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 58615695 2.78 % 12625113 1.20 % 45990582 4.37 %
Bisulfite_reads C2T 1048796227 49.80 % 532359594 50.55 % 516436633 49.04 %
Bisulfite_reads G2A 998663400 47.42 % 508052954 48.25 % 490610446 46.59 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 841597273
Average Unique 79.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 82826205193 38.94 % 32676172292 30.72 % 50150032901 47.15 %
Base Counts Overall C 22081188504 10.38 % 1115667737 1.05 % 20965520767 19.71 %
Base Counts Overall G 22305269847 10.49 % 21213007435 19.95 % 1092262412 1.03 %
Base Counts Overall T 81836161366 38.47 % 50279705102 47.27 % 31556456264 29.67 %
Base Counts Overall N 3664782612 1.72 % 1072251195 1.01 % 2592531417 2.44 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9892977082601432
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 971587152



Mapping Quality

Mapping Quality Histogram
K006154_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006154_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0328.Bisulfite-Seq.DNA_Methylation.EGAX00001273374.fastq_MS032801