/EXTERNAL McGill EMC/mapping_coverage/K006154_1_lane_gembs
BACK
SAMPLE K006154_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2030935314 |
100% |
183432902042 |
100% |
| Mapped |
1988472732 |
97.91 % |
179186643842 |
97.69 % |
| Passed |
1665531147 |
82.01 % |
146892485342 |
80.08 % |
| NotPassed |
322941585 |
15.90 % |
32294158500 |
17.61 % |
| |
|
|
|
|
| LowMAPQ |
271997428 |
13.39 % |
27199742800 |
14.83 % |
| MateUnmapped |
42462582 |
2.09 % |
4246258200 |
2.31 % |
| Duplicate |
15470798 |
0.76 % |
1547079800 |
0.84 % |
| BadOrientation |
96 |
0.00 % |
9600 |
0.00 % |
| LargeInsertSize |
12082 |
0.00 % |
1208200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35461181 |
1.75 % |
3546118100 |
1.93 % |
| Unmapped |
42462582 |
2.09 % |
4246258200 |
2.31 % |
Base Level Counts
| Bases |
# |
% |
| Total |
166533567900 |
100% |
| Passed |
136248343347 |
81.81 % |
| Trimmed |
7413757435 |
4.45 % |
| Clipped |
867318355 |
0.52 % |
| Overlapping |
18773764203 |
11.27 % |
| LowQuality |
3230384560 |
1.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |