/EXTERNAL McGill EMC/methylation/K006154_1_lane_gembs

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SAMPLE K006154_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26794680 24831207 92.67 %
NonRefCpG 140052 87018 62.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006154_1_lane_gembs_coverage_refCpG.png ./IMG//K006154_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006154_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006154_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006154_1_lane_gembs_quality_refcpg.png ./IMG//K006154_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006154_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6260333 11.83 % 5846192 11.64 % 23571 9.10 % 9104 4.77 %
Intermediate (0.3-0.7) 7014749 13.26 % 6201834 12.35 % 48349 18.67 % 26688 13.97 %
Methylated (0.7-1) 39639382 74.91 % 38163409 76.01 % 187013 72.22 % 155184 81.26 %
Median Methylation 0.850 0.860 0.830 0.860