/EXTERNAL McGill EMC/K006157_1_lane_gembs

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SAMPLE K006157_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 602358186 100.00 % 301179093 100.00 % 301179093 100.00 %
General Reads 576697296 95.74 % 292862256 97.24 % 283835040 94.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 305424 0.05 % 155255 0.05 % 150169 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25355466 4.21 % 8161582 2.71 % 17193884 5.71 %
Bisulfite_reads C2T 295018401 48.98 % 149781017 49.73 % 145237384 48.22 %
Bisulfite_reads G2A 281984319 46.81 % 143236494 47.56 % 138747825 46.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 225310225
Average Unique 74.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 23477747522 38.59 % 9792486178 32.19 % 13685261344 44.99 %
Base Counts Overall C 6748314435 11.09 % 473930229 1.56 % 6274384206 20.63 %
Base Counts Overall G 6912032222 11.36 % 6333670059 20.82 % 578362163 1.90 %
Base Counts Overall T 23019749596 37.84 % 13514493764 44.43 % 9505255832 31.25 %
Base Counts Overall N 680333011 1.12 % 304508163 1.00 % 375824848 1.24 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9827792088418945
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 261209874



Mapping Quality

Mapping Quality Histogram
K006157_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006157_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272799.fastq_MS000202