/EXTERNAL McGill EMC/mapping_coverage/K006157_1_lane_gembs
BACK
SAMPLE K006157_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
574536431 |
100% |
51728883903 |
100% |
| Mapped |
560142046 |
97.49 % |
50289445403 |
97.22 % |
| Passed |
449931710 |
78.31 % |
39268411803 |
75.91 % |
| NotPassed |
110210336 |
19.18 % |
11021033600 |
21.31 % |
| |
|
|
|
|
| LowMAPQ |
98751824 |
17.19 % |
9875182400 |
19.09 % |
| MateUnmapped |
14394385 |
2.51 % |
1439438500 |
2.78 % |
| Duplicate |
2191999 |
0.38 % |
219199900 |
0.42 % |
| BadOrientation |
76 |
0.00 % |
7600 |
0.00 % |
| LargeInsertSize |
5558 |
0.00 % |
555800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9260879 |
1.61 % |
926087900 |
1.79 % |
| Unmapped |
14394385 |
2.51 % |
1439438500 |
2.78 % |
Base Level Counts
| Bases |
# |
% |
| Total |
44974312000 |
100% |
| Passed |
36029342669 |
80.11 % |
| Trimmed |
2020173852 |
4.49 % |
| Clipped |
85827648 |
0.19 % |
| Overlapping |
5620072549 |
12.50 % |
| LowQuality |
1218895282 |
2.71 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |