/EXTERNAL McGill EMC/methylation/K006157_1_lane_gembs

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SAMPLE K006157_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26375783 11823858 44.83 %
NonRefCpG 292363 95822 32.78 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006157_1_lane_gembs_coverage_refCpG.png ./IMG//K006157_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006157_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006157_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006157_1_lane_gembs_quality_refcpg.png ./IMG//K006157_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006157_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5551098 11.15 % 1235607 4.42 % 85855 15.91 % 17096 6.61 %
Intermediate (0.3-0.7) 13925859 27.96 % 5997654 21.44 % 159146 29.50 % 59312 22.94 %
Methylated (0.7-1) 30324857 60.89 % 20738910 74.14 % 294465 54.58 % 182112 70.44 %
Median Methylation 0.780 0.840 0.730 0.830