/EXTERNAL McGill EMC/mapping_coverage/K006159_1_lane_gembs
BACK
SAMPLE K006159_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
759767460 |
100% |
67920081847 |
100% |
| Mapped |
753339389 |
99.15 % |
67277274747 |
99.05 % |
| Passed |
553273640 |
72.82 % |
47270699847 |
69.60 % |
| NotPassed |
200065749 |
26.33 % |
20006574900 |
29.46 % |
| |
|
|
|
|
| LowMAPQ |
133294296 |
17.54 % |
13329429600 |
19.63 % |
| MateUnmapped |
6428071 |
0.85 % |
642807100 |
0.95 % |
| Duplicate |
39121658 |
5.15 % |
3912165800 |
5.76 % |
| BadOrientation |
74 |
0.00 % |
7400 |
0.00 % |
| LargeInsertSize |
112306 |
0.01 % |
11230600 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
27537415 |
3.62 % |
2753741500 |
4.05 % |
| Unmapped |
6428071 |
0.85 % |
642807100 |
0.95 % |
Base Level Counts
| Bases |
# |
% |
| Total |
55305781000 |
100% |
| Passed |
44026697619 |
79.61 % |
| Trimmed |
2497091554 |
4.52 % |
| Clipped |
106476162 |
0.19 % |
| Overlapping |
7928604991 |
14.34 % |
| LowQuality |
746910674 |
1.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |