/EXTERNAL McGill EMC/K006160_1_lane_gembs/McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425232.release_6

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SAMPLE K006160_1_lane_gembs LANE McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425232.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 867779188 100.00 % 433889594 100.00 % 433889594 100.00 %
General Reads 773867240 89.18 % 388902461 89.63 % 384964779 88.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 56127 0.01 % 28165 0.01 % 27962 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 93855821 10.82 % 44958968 10.36 % 48896853 11.27 %
Bisulfite_reads C2T 396479705 45.69 % 199238056 45.92 % 197241649 45.46 %
Bisulfite_reads G2A 377443662 43.50 % 189692570 43.72 % 187751092 43.27 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 280116620
Average Unique 64.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32416892538 36.99 % 12720130374 29.03 % 19696762164 44.95 %
Base Counts Overall C 10949268415 12.49 % 1500225805 3.42 % 9449042610 21.56 %
Base Counts Overall G 10924636289 12.46 % 9529305578 21.75 % 1395330711 3.18 %
Base Counts Overall T 32383529113 36.95 % 19634611562 44.80 % 12748917551 29.09 %
Base Counts Overall N 971371633 1.11 % 438575675 1.00 % 532795958 1.22 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9845631461202159
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 355345518



Mapping Quality

Mapping Quality Histogram
McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425232.release_6.mapq.png



Read Length

Read Length Reads
100 433889594
100 433889594



Insert Size Plot

Insert Size Histogram
McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425232.release_6.isize.png