/EXTERNAL McGill EMC/methylation/K006160_1_lane_gembs

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SAMPLE K006160_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25146857 13974191 55.57 %
NonRefCpG 322500 110375 34.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006160_1_lane_gembs_coverage_refCpG.png ./IMG//K006160_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006160_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006160_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006160_1_lane_gembs_quality_refcpg.png ./IMG//K006160_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006160_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5781785 11.77 % 1997369 6.04 % 120483 20.22 % 14970 5.26 %
Intermediate (0.3-0.7) 11874073 24.17 % 6578871 19.88 % 159939 26.84 % 57928 20.36 %
Methylated (0.7-1) 31473935 64.06 % 24513286 74.08 % 315552 52.95 % 211650 74.38 %
Median Methylation 0.790 0.840 0.720 0.840