/EXTERNAL McGill EMC/mapping_coverage/K006162_1_lane_gembs
BACK
SAMPLE K006162_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
568855380 |
100% |
52262877324 |
100% |
| Mapped |
562448849 |
98.87 % |
51622224224 |
98.77 % |
| Passed |
450982205 |
79.28 % |
40475559824 |
77.45 % |
| NotPassed |
111466644 |
19.59 % |
11146664400 |
21.33 % |
| |
|
|
|
|
| LowMAPQ |
96271120 |
16.92 % |
9627112000 |
18.42 % |
| MateUnmapped |
6406531 |
1.13 % |
640653100 |
1.23 % |
| Duplicate |
6744460 |
1.19 % |
674446000 |
1.29 % |
| BadOrientation |
76 |
0.00 % |
7600 |
0.00 % |
| LargeInsertSize |
7502 |
0.00 % |
750200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8443486 |
1.48 % |
844348600 |
1.62 % |
| Unmapped |
6406531 |
1.13 % |
640653100 |
1.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
45068158800 |
100% |
| Passed |
37598490826 |
83.43 % |
| Trimmed |
2074993838 |
4.60 % |
| Clipped |
59011718 |
0.13 % |
| Overlapping |
4533587258 |
10.06 % |
| LowQuality |
802075160 |
1.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |