/EXTERNAL McGill EMC/methylation/K006162_1_lane_gembs

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SAMPLE K006162_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26217370 11401779 43.49 %
NonRefCpG 297685 93200 31.31 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006162_1_lane_gembs_coverage_refCpG.png ./IMG//K006162_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006162_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006162_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006162_1_lane_gembs_quality_refcpg.png ./IMG//K006162_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006162_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4897773 10.00 % 946405 3.59 % 87470 15.99 % 15101 6.13 %
Intermediate (0.3-0.7) 13432657 27.43 % 5308103 20.14 % 159252 29.11 % 53928 21.87 %
Methylated (0.7-1) 30644331 62.57 % 20095216 76.26 % 300308 54.90 % 177511 72.00 %
Median Methylation 0.790 0.850 0.740 0.840