/EXTERNAL McGill EMC/K006164_1_lane_gembs

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SAMPLE K006164_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 970130460 100.00 % 485065230 100.00 % 485065230 100.00 %
General Reads 928844751 95.74 % 465622937 95.99 % 463221814 95.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 558166 0.06 % 280103 0.06 % 278063 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 40727543 4.20 % 19162190 3.95 % 21565353 4.45 %
Bisulfite_reads C2T 476361806 49.10 % 238803958 49.23 % 237557848 48.97 %
Bisulfite_reads G2A 453041111 46.70 % 227099082 46.82 % 225942029 46.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 378691644
Average Unique 78.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38099012253 38.88 % 16530571525 33.74 % 21568440728 44.02 %
Base Counts Overall C 10801321578 11.02 % 931999750 1.90 % 9869321828 20.14 %
Base Counts Overall G 10954577035 11.18 % 9977100108 20.36 % 977476927 2.00 %
Base Counts Overall T 37110389688 37.87 % 21060572875 42.99 % 16049816813 32.76 %
Base Counts Overall N 1017875906 1.04 % 491343972 1.00 % 526531934 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9721676906316694
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 441043330



Mapping Quality

Mapping Quality Histogram
K006164_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006164_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0004.Bisulfite-Seq.DNA_Methylation.EGAX00001272806.fastq_MS000401