/EXTERNAL McGill EMC/methylation/K006164_1_lane_gembs

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SAMPLE K006164_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26405093 16332121 61.85 %
NonRefCpG 267914 136396 50.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006164_1_lane_gembs_coverage_refCpG.png ./IMG//K006164_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006164_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006164_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006164_1_lane_gembs_quality_refcpg.png ./IMG//K006164_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006164_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5405781 10.63 % 1759275 4.84 % 62020 12.33 % 18755 5.78 %
Intermediate (0.3-0.7) 13289972 26.14 % 7865928 21.63 % 141465 28.13 % 75084 23.14 %
Methylated (0.7-1) 32139397 63.22 % 26746374 73.54 % 299476 59.54 % 230665 71.08 %
Median Methylation 0.790 0.840 0.770 0.830