/EXTERNAL McGill EMC/K006166_1_lane_gembs/McGill0010.Bisulfite-Seq.DNA_Methylation.EGAX00001425095.release_6

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SAMPLE K006166_1_lane_gembs LANE McGill0010.Bisulfite-Seq.DNA_Methylation.EGAX00001425095.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 399101266 100.00 % 199550633 100.00 % 199550633 100.00 %
General Reads 385178522 96.51 % 193697620 97.07 % 191480902 95.96 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 837065 0.21 % 421152 0.21 % 415913 0.21 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13085679 3.28 % 5431861 2.72 % 7653818 3.84 %
Bisulfite_reads C2T 197378452 49.46 % 99250455 49.74 % 98127997 49.17 %
Bisulfite_reads G2A 188637135 47.27 % 94868317 47.54 % 93768818 46.99 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 161557847
Average Unique 80.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15720933260 39.00 % 6593481175 32.71 % 9127452085 45.29 %
Base Counts Overall C 4331600115 10.75 % 316243656 1.57 % 4015356459 19.92 %
Base Counts Overall G 4413141613 10.95 % 4091668496 20.30 % 321473117 1.60 %
Base Counts Overall T 15433978512 38.29 % 8951654084 44.41 % 6482324428 32.16 %
Base Counts Overall N 409574366 1.02 % 201566522 1.00 % 208007844 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9707309396563876
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 184886782



Mapping Quality

Mapping Quality Histogram
McGill0010.Bisulfite-Seq.DNA_Methylation.EGAX00001425095.release_6.mapq.png



Read Length

Read Length Reads
100 199550633
100 199550633



Insert Size Plot

Insert Size Histogram
McGill0010.Bisulfite-Seq.DNA_Methylation.EGAX00001425095.release_6.isize.png