/EXTERNAL McGill EMC/mapping_coverage/K006166_1_lane_gembs
BACK
SAMPLE K006166_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
376882310 |
100% |
34761168462 |
100% |
| Mapped |
372085330 |
98.73 % |
34281470462 |
98.62 % |
| Passed |
308005135 |
81.72 % |
27873450962 |
80.19 % |
| NotPassed |
64080195 |
17.00 % |
6408019500 |
18.43 % |
| |
|
|
|
|
| LowMAPQ |
49356178 |
13.10 % |
4935617800 |
14.20 % |
| MateUnmapped |
4796980 |
1.27 % |
479698000 |
1.38 % |
| Duplicate |
8321673 |
2.21 % |
832167300 |
2.39 % |
| BadOrientation |
14 |
0.00 % |
1400 |
0.00 % |
| LargeInsertSize |
2458 |
0.00 % |
245800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6399872 |
1.70 % |
639987200 |
1.84 % |
| Unmapped |
4796980 |
1.27 % |
479698000 |
1.38 % |
Base Level Counts
| Bases |
# |
% |
| Total |
30772892600 |
100% |
| Passed |
25763328956 |
83.72 % |
| Trimmed |
1405142060 |
4.57 % |
| Clipped |
43114819 |
0.14 % |
| Overlapping |
2856326819 |
9.28 % |
| LowQuality |
704979946 |
2.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |