/EXTERNAL McGill EMC/methylation/K006166_1_lane_gembs

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SAMPLE K006166_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25616476 6909447 26.97 %
NonRefCpG 302169 57008 18.87 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006166_1_lane_gembs_coverage_refCpG.png ./IMG//K006166_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006166_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006166_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006166_1_lane_gembs_quality_refcpg.png ./IMG//K006166_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006166_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4711187 10.21 % 477754 2.89 % 85586 15.82 % 7711 4.81 %
Intermediate (0.3-0.7) 12894064 27.93 % 3141159 18.99 % 159009 29.39 % 32294 20.13 %
Methylated (0.7-1) 28555606 61.86 % 12922951 78.12 % 296463 54.79 % 120429 75.06 %
Median Methylation 0.780 0.860 0.730 0.850