/EXTERNAL McGill EMC/K006169_1_lane_gembs

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SAMPLE K006169_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1142654628 100.00 % 571327314 100.00 % 571327314 100.00 %
General Reads 1112838452 97.39 % 557519490 97.58 % 555318962 97.20 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 691680 0.06 % 347069 0.06 % 344611 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29124496 2.55 % 13460755 2.36 % 15663741 2.74 %
Bisulfite_reads C2T 567870691 49.70 % 284489788 49.79 % 283380903 49.60 %
Bisulfite_reads G2A 545659441 47.75 % 273376771 47.85 % 272282670 47.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 458445167
Average Unique 80.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45411202095 39.35 % 19279288897 33.41 % 26131913198 45.29 %
Base Counts Overall C 11898414821 10.31 % 810063340 1.40 % 11088351481 19.22 %
Base Counts Overall G 11890794409 10.30 % 11005656384 19.07 % 885138025 1.53 %
Base Counts Overall T 45022915972 39.01 % 26031191308 45.11 % 18991724664 32.91 %
Base Counts Overall N 1184790131 1.03 % 577858785 1.00 % 606931346 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.960269083259839
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 523835825



Mapping Quality

Mapping Quality Histogram
K006169_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006169_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272789.fastq_MS000201