/EXTERNAL McGill EMC/K006169_1_lane_gembs/McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272789.fastq_MS000201

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SAMPLE K006169_1_lane_gembs LANE McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272789.fastq_MS000201

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1142654628	100.00 %	571327314	100.00 %	571327314	100.00 %
General Reads	1112838452	97.39 %	557519490	97.58 %	555318962	97.20 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	691680	0.06 %	347069	0.06 %	344611	0.06 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	29124496	2.55 %	13460755	2.36 %	15663741	2.74 %
Bisulfite_reads C2T	567870691	49.70 %	284489788	49.79 %	283380903	49.60 %
Bisulfite_reads G2A	545659441	47.75 %	273376771	47.85 %	272282670	47.66 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	458445167
Average Unique	80.24 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	45411202095	39.35 %	19279288897	33.41 %	26131913198	45.29 %
Base Counts Overall C	11898414821	10.31 %	810063340	1.40 %	11088351481	19.22 %
Base Counts Overall G	11890794409	10.30 %	11005656384	19.07 %	885138025	1.53 %
Base Counts Overall T	45022915972	39.01 %	26031191308	45.11 %	18991724664	32.91 %
Base Counts Overall N	1184790131	1.03 %	577858785	1.00 %	606931346	1.05 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.960269083259839
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	523835825

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	571327314
100	571327314

Insert Size Plot

Insert Size Histogram