/EXTERNAL McGill EMC/mapping_coverage/K006169_1_lane_gembs
BACK
SAMPLE K006169_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
808382078 |
100% |
77915272566 |
100% |
| Mapped |
797933521 |
98.71 % |
76870416866 |
98.66 % |
| Passed |
311498741 |
38.53 % |
28226938866 |
36.23 % |
| NotPassed |
486434780 |
60.17 % |
48643478000 |
62.43 % |
| |
|
|
|
|
| LowMAPQ |
169250002 |
20.94 % |
16925000200 |
21.72 % |
| MateUnmapped |
10448557 |
1.29 % |
1044855700 |
1.34 % |
| Duplicate |
306406593 |
37.90 % |
30640659300 |
39.33 % |
| BadOrientation |
118 |
0.00 % |
11800 |
0.00 % |
| LargeInsertSize |
243146 |
0.03 % |
24314600 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10534921 |
1.30 % |
1053492100 |
1.35 % |
| Unmapped |
10448557 |
1.29 % |
1044855700 |
1.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
31075166100 |
100% |
| Passed |
26278328326 |
84.56 % |
| Trimmed |
1399733592 |
4.50 % |
| Clipped |
91079300 |
0.29 % |
| Overlapping |
2757147934 |
8.87 % |
| LowQuality |
548876948 |
1.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |