/EXTERNAL McGill EMC/methylation/K006169_1_lane_gembs

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SAMPLE K006169_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24945876 6039319 24.21 %
NonRefCpG 329256 51200 15.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006169_1_lane_gembs_coverage_refCpG.png ./IMG//K006169_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006169_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006169_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006169_1_lane_gembs_quality_refcpg.png ./IMG//K006169_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006169_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4601089 10.52 % 468336 3.26 % 115032 19.95 % 8325 5.76 %
Intermediate (0.3-0.7) 12380310 28.30 % 2674668 18.64 % 172008 29.83 % 28888 19.98 %
Methylated (0.7-1) 26769649 61.19 % 11208093 78.10 % 289574 50.22 % 107403 74.27 %
Median Methylation 0.780 0.860 0.700 0.850