/EXTERNAL McGill EMC/K006171_1_lane_gembs

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SAMPLE K006171_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1069606064 100.00 % 534803032 100.00 % 534803032 100.00 %
General Reads 917248883 85.76 % 461320634 86.26 % 455928249 85.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 108900 0.01 % 54657 0.01 % 54243 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 152248281 14.23 % 73427741 13.73 % 78820540 14.74 %
Bisulfite_reads C2T 477407388 44.63 % 240140681 44.90 % 237266707 44.37 %
Bisulfite_reads G2A 439950395 41.13 % 221234610 41.37 % 218715785 40.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 255110386
Average Unique 47.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39125457011 36.22 % 15890428656 29.42 % 23235028355 43.02 %
Base Counts Overall C 14485780657 13.41 % 2224272692 4.12 % 12261507965 22.70 %
Base Counts Overall G 14535514204 13.46 % 12453744854 23.06 % 2081769350 3.85 %
Base Counts Overall T 38708540105 35.83 % 22906951239 42.41 % 15801588866 29.25 %
Base Counts Overall N 1174920487 1.09 % 539708791 1.00 % 635211696 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9851194772516432
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 382268076



Mapping Quality

Mapping Quality Histogram
K006171_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006171_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425241.release_6