/EXTERNAL McGill EMC/mapping_coverage/K006171_1_lane_gembs
BACK
SAMPLE K006171_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
897491960 |
100% |
83078984287 |
100% |
| Mapped |
879969830 |
98.05 % |
81326771287 |
97.89 % |
| Passed |
483877187 |
53.91 % |
41717506987 |
50.21 % |
| NotPassed |
396092643 |
44.13 % |
39609264300 |
47.68 % |
| |
|
|
|
|
| LowMAPQ |
262358372 |
29.23 % |
26235837200 |
31.58 % |
| MateUnmapped |
17522130 |
1.95 % |
1752213000 |
2.11 % |
| Duplicate |
19875668 |
2.21 % |
1987566800 |
2.39 % |
| BadOrientation |
42 |
0.00 % |
4200 |
0.00 % |
| LargeInsertSize |
1282292 |
0.14 % |
128229200 |
0.15 % |
| |
|
|
|
|
| NotCorrectlyAligned |
112576269 |
12.54 % |
11257626900 |
13.55 % |
| Unmapped |
17522130 |
1.95 % |
1752213000 |
2.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
48379836800 |
100% |
| Passed |
38996119587 |
80.60 % |
| Trimmed |
2103081315 |
4.35 % |
| Clipped |
266037174 |
0.55 % |
| Overlapping |
6396292639 |
13.22 % |
| LowQuality |
618306085 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |