/EXTERNAL McGill EMC/methylation/K006171_1_lane_gembs

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SAMPLE K006171_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24059706 11507410 47.83 %
NonRefCpG 327057 90419 27.65 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006171_1_lane_gembs_coverage_refCpG.png ./IMG//K006171_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006171_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006171_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006171_1_lane_gembs_quality_refcpg.png ./IMG//K006171_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006171_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5825334 12.43 % 1525394 5.36 % 140564 23.55 % 18365 7.23 %
Intermediate (0.3-0.7) 12652806 27.00 % 6449325 22.65 % 170362 28.54 % 59189 23.29 %
Methylated (0.7-1) 28388723 60.57 % 20502047 72.00 % 286009 47.91 % 176597 69.48 %
Median Methylation 0.770 0.820 0.680 0.820