/EXTERNAL McGill EMC/K006175_1_lane_gembs

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SAMPLE K006175_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1343921156 100.00 % 671960578 100.00 % 671960578 100.00 %
General Reads 1086802125 80.87 % 539949013 80.35 % 546853112 81.38 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5972907 0.44 % 2989860 0.44 % 2983047 0.44 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 251146124 18.69 % 129021705 19.20 % 122124419 18.17 %
Bisulfite_reads C2T 555436086 41.33 % 276052757 41.08 % 279383329 41.58 %
Bisulfite_reads G2A 537338946 39.98 % 266886116 39.72 % 270452830 40.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 439864869
Average Unique 65.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 51904020264 38.24 % 21283513923 31.36 % 30620506341 45.12 %
Base Counts Overall C 17433407720 12.84 % 3929956156 5.79 % 13503451564 19.90 %
Base Counts Overall G 17061632450 12.57 % 13127412906 19.34 % 3934219544 5.80 %
Base Counts Overall T 47908965506 35.30 % 28843872702 42.50 % 19065092804 28.09 %
Base Counts Overall N 1428010816 1.05 % 683262691 1.01 % 744748125 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9883497894655756
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 501239579



Mapping Quality

Mapping Quality Histogram
K006175_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006175_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0017.Bisulfite-Seq.DNA_Methylation.EGAX00001272927.fastq_MS001701