/EXTERNAL McGill EMC/mapping_coverage/K006175_1_lane_gembs
BACK
SAMPLE K006175_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1033699213 |
100% |
95402755826 |
100% |
| Mapped |
1014524699 |
98.15 % |
93485304426 |
97.99 % |
| Passed |
775799378 |
75.05 % |
69612772326 |
72.97 % |
| NotPassed |
238725321 |
23.09 % |
23872532100 |
25.02 % |
| |
|
|
|
|
| LowMAPQ |
144231752 |
13.95 % |
14423175200 |
15.12 % |
| MateUnmapped |
19174514 |
1.85 % |
1917451400 |
2.01 % |
| Duplicate |
53353812 |
5.16 % |
5335381200 |
5.59 % |
| BadOrientation |
56 |
0.00 % |
5600 |
0.00 % |
| LargeInsertSize |
145610 |
0.01 % |
14561000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
40994091 |
3.97 % |
4099409100 |
4.30 % |
| Unmapped |
19174514 |
1.85 % |
1917451400 |
2.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77554814100 |
100% |
| Passed |
64313030909 |
82.93 % |
| Trimmed |
3569156248 |
4.60 % |
| Clipped |
136962172 |
0.18 % |
| Overlapping |
7805079602 |
10.06 % |
| LowQuality |
1730585169 |
2.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |