/EXTERNAL McGill EMC/methylation/K006175_1_lane_gembs

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SAMPLE K006175_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26696313 21056395 78.87 %
NonRefCpG 255458 170849 66.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006175_1_lane_gembs_coverage_refCpG.png ./IMG//K006175_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006175_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006175_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006175_1_lane_gembs_quality_refcpg.png ./IMG//K006175_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006175_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7263343 13.82 % 5156904 11.41 % 49416 10.24 % 24175 6.52 %
Intermediate (0.3-0.7) 13474521 25.65 % 10912750 24.14 % 133255 27.62 % 92329 24.92 %
Methylated (0.7-1) 31803332 60.53 % 29127475 64.45 % 299812 62.14 % 254072 68.56 %
Median Methylation 0.770 0.800 0.780 0.810