/EXTERNAL McGill EMC/K006176_1_lane_gembs

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SAMPLE K006176_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 893108728 100.00 % 446554364 100.00 % 446554364 100.00 %
General Reads 874329412 97.90 % 439705236 98.47 % 434624176 97.33 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2974445 0.33 % 1497911 0.34 % 1476534 0.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15804871 1.77 % 5351217 1.20 % 10453654 2.34 %
Bisulfite_reads C2T 448453268 50.21 % 225499607 50.50 % 222953661 49.93 %
Bisulfite_reads G2A 428850589 48.02 % 215703540 48.30 % 213147049 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 361426810
Average Unique 80.94 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35187862809 39.01 % 13842659109 30.69 % 21345203700 47.33 %
Base Counts Overall C 9461076866 10.49 % 428822110 0.95 % 9032254756 20.03 %
Base Counts Overall G 9460930226 10.49 % 9033983358 20.03 % 426946868 0.95 %
Base Counts Overall T 35023666500 38.83 % 21346112596 47.33 % 13677553904 30.33 %
Base Counts Overall N 1070445127 1.19 % 450413591 1.00 % 620031536 1.37 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9962973089062386
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 413853975



Mapping Quality

Mapping Quality Histogram
K006176_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006176_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0180.Bisulfite-Seq.DNA_Methylation.EGAX00001425284.release_6