/EXTERNAL McGill EMC/mapping_coverage/K006176_1_lane_gembs
BACK
SAMPLE K006176_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
863010862 |
100% |
75330936038 |
100% |
| Mapped |
853185654 |
98.86 % |
74348415238 |
98.70 % |
| Passed |
704276061 |
81.61 % |
59457455938 |
78.93 % |
| NotPassed |
148909593 |
17.25 % |
14890959300 |
19.77 % |
| |
|
|
|
|
| LowMAPQ |
118245048 |
13.70 % |
11824504800 |
15.70 % |
| MateUnmapped |
9825208 |
1.14 % |
982520800 |
1.30 % |
| Duplicate |
11356907 |
1.32 % |
1135690700 |
1.51 % |
| BadOrientation |
56 |
0.00 % |
5600 |
0.00 % |
| LargeInsertSize |
5262 |
0.00 % |
526200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19302320 |
2.24 % |
1930232000 |
2.56 % |
| Unmapped |
9825208 |
1.14 % |
982520800 |
1.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70416218500 |
100% |
| Passed |
55111507087 |
78.27 % |
| Trimmed |
3033947897 |
4.31 % |
| Clipped |
142441342 |
0.20 % |
| Overlapping |
10816321220 |
15.36 % |
| LowQuality |
1312000954 |
1.86 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |