/EXTERNAL McGill EMC/methylation/K006176_1_lane_gembs

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SAMPLE K006176_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26547483 19809593 74.62 %
NonRefCpG 260027 165338 63.58 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006176_1_lane_gembs_coverage_refCpG.png ./IMG//K006176_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006176_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006176_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006176_1_lane_gembs_quality_refcpg.png ./IMG//K006176_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006176_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6137289 11.79 % 3489996 8.18 % 42476 8.65 % 15904 4.40 %
Intermediate (0.3-0.7) 9860575 18.94 % 7067342 16.56 % 103947 21.16 % 61019 16.89 %
Methylated (0.7-1) 36061572 69.27 % 32121764 75.26 % 344855 70.20 % 284285 78.70 %
Median Methylation 0.830 0.850 0.830 0.860