/EXTERNAL McGill EMC/K006179_1_lane_gembs

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SAMPLE K006179_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1163131960 100.00 % 581565980 100.00 % 581565980 100.00 %
General Reads 1137647063 97.81 % 570424437 98.08 % 567222626 97.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 312376 0.03 % 156608 0.03 % 155768 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25172521 2.16 % 10984935 1.89 % 14187586 2.44 %
Bisulfite_reads C2T 582719186 50.10 % 292173224 50.24 % 290545962 49.96 %
Bisulfite_reads G2A 555240253 47.74 % 278407821 47.87 % 276832432 47.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 462384284
Average Unique 79.51 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45350638474 38.60 % 18333327982 31.21 % 27017310492 46.00 %
Base Counts Overall C 12907333955 10.99 % 748641006 1.27 % 12158692949 20.70 %
Base Counts Overall G 13096574031 11.15 % 12266657831 20.88 % 829916200 1.41 %
Base Counts Overall T 44925318807 38.24 % 26802214649 45.63 % 18123104158 30.85 %
Base Counts Overall N 1196462693 1.02 % 587322512 1.00 % 609140181 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9829537121196968
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 533767851



Mapping Quality

Mapping Quality Histogram
K006179_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006179_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425223.release_6