/EXTERNAL McGill EMC/K006179_1_lane_gembs/McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425223.release_6

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SAMPLE K006179_1_lane_gembs LANE McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425223.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1163131960	100.00 %	581565980	100.00 %	581565980	100.00 %
General Reads	1137647063	97.81 %	570424437	98.08 %	567222626	97.53 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	312376	0.03 %	156608	0.03 %	155768	0.03 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	25172521	2.16 %	10984935	1.89 %	14187586	2.44 %
Bisulfite_reads C2T	582719186	50.10 %	292173224	50.24 %	290545962	49.96 %
Bisulfite_reads G2A	555240253	47.74 %	278407821	47.87 %	276832432	47.60 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	462384284
Average Unique	79.51 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	45350638474	38.60 %	18333327982	31.21 %	27017310492	46.00 %
Base Counts Overall C	12907333955	10.99 %	748641006	1.27 %	12158692949	20.70 %
Base Counts Overall G	13096574031	11.15 %	12266657831	20.88 %	829916200	1.41 %
Base Counts Overall T	44925318807	38.24 %	26802214649	45.63 %	18123104158	30.85 %
Base Counts Overall N	1196462693	1.02 %	587322512	1.00 %	609140181	1.04 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9829537121196968
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	533767851

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	581565980
100	581565980

Insert Size Plot

Insert Size Histogram